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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63897431_63899514_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63897431 - 63899514
Intron Length:
2084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTCT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGAAAT
U12 Branch Point Sequence:
CGTACTAGAAAG
Flanking Amino Acid:
RASPAEPCLKT*
Intron Amino Acid Position:
2680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.9
28.5
Major BPS
59.4
0.23
1.2
65.3
38.6
Major PPT
79.7
0.67
0.9
76.7
36.8
Minor 5ss
36.7
-1.5
3
50.4
46
Minor BPS
41.8
-0.7
1.8
44.28
40.9

Associated Gene:

Gene:
HIVEP1
Ensembl Gene ID:
ENSAPLG00000012713
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023561
63897425 - 63975174
77750