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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63898704_63899514_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63898704 - 63899514
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTCT
5'SS Class:
strong_major
3'SS Sequence:
CAATTGCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATCAT
U12 Branch Point Sequence:
GATTCGTTCATT
Flanking Amino Acid:
RASPAEPCLKLERIC*
Intron Amino Acid Position:
2680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.9
28.5
Major BPS
70.5
0.51
1.3
74
41.2
Major PPT
73.1
0.52
1
65.7
40.4
Minor 5ss
36.7
-1.5
3
50.4
46
Minor BPS
49.5
0.04
2.4
73.68
43.4

Associated Gene:

Gene:
HIVEP1
Ensembl Gene ID:
ENSAPLG00000012713
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045302
63898686 - 63975174
76489