Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

63900529 - 63903323

Intron Length:

2795

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAGTG

5'SS Class:

strong_major

3'SS Sequence:

TGTCCTCTCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

ATCCTGTTAACG

Flanking Amino Acid:

SLVSTAVLTKSTPSTSSPSS

Intron Amino Acid Position:

2301

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

69.9

41.1

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

77.7

0.62

0.8

69.3

36.9

Minor 5ss

32.6

-2

3.7

46.1

49.1

Minor BPS

49.7

-0.1

2.1

58.49

43.4

Associated Gene:

Gene:

HIVEP1

Ensembl Gene ID:

ENSAPLG00000012713

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023561

63897425 - 63975174

77750

ENSAPLT00000029698

63896637 - 64010475

113839

ENSAPLT00000045302

63898686 - 63975174

76489

ENSAPLT00000013234

63896637 - 63930407

33771

ENSAPLT00000029632

63896637 - 64010475

113839

ENSAPLT00000036410

63896637 - 64009033

112397

ENSAPLT00000028877

63896637 - 63981621

84985

ENSAPLT00000033170

63896637 - 64009033

112397

ENSAPLT00000026926

63896637 - 63945799

49163

ENSAPLT00000031370

63896637 - 64009033

112397

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63900529_63903323_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: