Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

63903842 - 63913103

Intron Length:

9262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

CTTACTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATTGGCTTAACT

Flanking Amino Acid:

IDDQDGEEEFGEKQRFGCDR

Intron Amino Acid Position:

2128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.8

86.3

28.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

85.6

0.8

80.3

31.5

Minor 5ss

39.6

-1.2

3.2

55.5

42.8

Minor BPS

69.1

0.68

1.9

86.17

Associated Gene:

Gene:

HIVEP1

Ensembl Gene ID:

ENSAPLG00000012713

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028877

63896637 - 63981621

84985

ENSAPLT00000033170

63896637 - 64009033

112397

ENSAPLT00000026926

63896637 - 63945799

49163

ENSAPLT00000031370

63896637 - 64009033

112397

ENSAPLT00000023561

63897425 - 63975174

77750

ENSAPLT00000029698

63896637 - 64010475

113839

ENSAPLT00000045302

63898686 - 63975174

76489

ENSAPLT00000013234

63896637 - 63930407

33771

ENSAPLT00000029632

63896637 - 64010475

113839

ENSAPLT00000036410

63896637 - 64009033

112397

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63903842_63913103_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: