About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6391467_6392857_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6391467 - 6392857
Intron Length:
1391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TTATTACTAAGT
Flanking Amino Acid:
VDIYSKFDVINLAAEKTYNN
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
82.6
29.6
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
86.1
0.81
0.8
83.6
31.4
Minor 5ss
41.2
-1
2.8
53
39
Minor BPS
48.4
-0
2.2
74.51
41.9

Associated Gene:

Gene:
PRKAG2
Ensembl Gene ID:
ENSAPLG00000004562
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004758
6386590 - 6594189
207600