Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

63916743 - 63923272

Intron Length:

6530

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTTATC

5'SS Class:

major

3'SS Sequence:

CATTTTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TATATCTCATTT

Flanking Amino Acid:

SSKWKNSLTKRALNRKKMTA

Intron Amino Acid Position:

1990

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

78.3

36.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

87.2

0.84

0.7

84.9

29.5

Minor 5ss

39.3

-1.2

54.6

42.6

Minor BPS

49.4

0.03

1.8

69.9

41.2

Associated Gene:

Gene:

HIVEP1

Ensembl Gene ID:

ENSAPLG00000012713

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036410

63896637 - 64009033

112397

ENSAPLT00000013234

63896637 - 63930407

33771

ENSAPLT00000029632

63896637 - 64010475

113839

ENSAPLT00000033170

63896637 - 64009033

112397

ENSAPLT00000028877

63896637 - 63981621

84985

ENSAPLT00000026926

63896637 - 63945799

49163

ENSAPLT00000031370

63896637 - 64009033

112397

ENSAPLT00000045302

63898686 - 63975174

76489

ENSAPLT00000023561

63897425 - 63975174

77750

ENSAPLT00000029698

63896637 - 64010475

113839

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63916743_63923272_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: