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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63942338_63945745_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
63942338 - 63945745
Intron Length:
3408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
AATCCATCACAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.8
38.2
Major BPS
59.7
0.24
1
67
29.8
Major PPT
85.5
0.8
0.7
77.2
31.5
Minor 5ss
33.9
-1.8
2.9
44.3
43
Minor BPS
41.5
-0.6
2
52.03
38.6

Associated Gene:

Gene:
HIVEP1
Ensembl Gene ID:
ENSAPLG00000012713
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026926
63896637 - 63945799
49163