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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63945800_64008886_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63945800 - 64008886
Intron Length:
63087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATATTTTAATA
Flanking Amino Acid:
TKQIHPRNLRDKIEEAQKQL
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.6
0.87
0.7
84
24.1
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
68.5
0.58
1.2
72.59
33.2

Associated Gene:

Gene:
HIVEP1
Ensembl Gene ID:
ENSAPLG00000012713
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029698
63896637 - 64010475
113839