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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6395722_6396537_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6395722 - 6396537
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTATACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTATACA
Flanking Amino Acid:
LEEHKIETWRELYLQETFKP
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.5
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
73.9
0.54
0.9
69
35.1
Minor 5ss
41.1
-1
3.1
48.2
47.3
Minor BPS
67.6
0.55
2
83.52
37

Associated Gene:

Gene:
PRKAG2
Ensembl Gene ID:
ENSAPLG00000004562
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004758
6386590 - 6594189
207600