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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6396584_6399412_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6396584 - 6399412
Intron Length:
2829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTACCTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTGCTTTCAAGT
Flanking Amino Acid:
ILHRYYKSPMVQIYELEEHK
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
73.3
0.52
1
66.3
39.2
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
49.1
0.01
1.8
68.75
42.6

Associated Gene:

Gene:
PRKAG2
Ensembl Gene ID:
ENSAPLG00000004562
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004758
6386590 - 6594189
207600