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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63975175_63981579_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63975175 - 63981579
Intron Length:
6405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGAACTTTCATT
Flanking Amino Acid:
QNYLADMPVTGDGGLLLNVF
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
38
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
27.1
-2.6
3
31.8
42.6
Minor BPS
52.8
0.17
1.8
70.12
41.1

Associated Gene:

Gene:
HIVEP1
Ensembl Gene ID:
ENSAPLG00000012713
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028877
63896637 - 63981621
84985