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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6400285_6412480_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6400285 - 6412480
Intron Length:
12196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTTATTTAGCT
Flanking Amino Acid:
KLVVFDTTLQVKKAFFALVA
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
91.4
0.93
0.6
87.5
22.7
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
64.3
0.53
1.7
83.5
37.2

Associated Gene:

Gene:
PRKAG2
Ensembl Gene ID:
ENSAPLG00000004562
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004758
6386590 - 6594189
207600