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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64004136_64008886_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
64004136 - 64008886
Intron Length:
4751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTTCTGACAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
79.4
0.66
0.9
77.9
36.6
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
48.1
-0.2
1.9
58.04
43.2

Associated Gene:

Gene:
HIVEP1
Ensembl Gene ID:
ENSAPLG00000012713
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031370
63896637 - 64009033
112397