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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64012224_64012313_R

Intron Information:

Intron Rank:
131603
Intron Class:
major
Intron Phase:
Intron Coordinates:
64012224 - 64012313
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TGCTATCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
CTTCTTTCAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
79.5
0.66
0.9
73.1
36.9
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
47.1
-0.1
1.7
64.72
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018014
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023430
64011111 - 64012569
1459