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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64026868_64027554_F

Intron Information:

Intron Rank:
124007
Intron Class:
major
Intron Phase:
Intron Coordinates:
64026868 - 64027554
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGAACC
5'SS Class:
major
3'SS Sequence:
CTCTTTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
ACTATCTTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
0.9
71.4
32
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
85.4
0.8
0.7
79.9
25.7
Minor 5ss
31
-2.2
2.9
36.7
33.4
Minor BPS
61.4
0.44
1.7
74.39
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016849
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046649
64025957 - 64028561
2605
ENSAPLT00000024848
64025957 - 64028561
2605