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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64027391_64027554_F

Intron Information:

Intron Rank:
124008
Intron Class:
major
Intron Phase:
Intron Coordinates:
64027391 - 64027554
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
ACTATCTTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
85.4
0.8
0.7
79.9
25.7
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
61.4
0.44
1.7
74.39
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016849
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045224
64027233 - 64028561
1329