Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_640575_640984_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

640575 - 640984

Intron Length:

410

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGAGAC

5'SS Class:

major

3'SS Sequence:

GTGTTGTGTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCACAT

U12 Branch Point Sequence:

AGGGACTTCACA

Flanking Amino Acid:

CKLRHAGRKLDMCAAEATAS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

0.9

67.3

31.4

Major BPS

77.7

0.69

83.3

27.7

Major PPT

70.2

0.46

1.1

61.5

48.6

Minor 5ss

25.4

-2.8

3.2

29.4

37.4

Minor BPS

46.3

-0.3

55.31

43.4

Associated Gene:

Gene:

ALS2CL

Ensembl Gene ID:

ENSAPLG00000005280

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022344

616350 - 641213

24864