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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64087115_64088541_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64087115 - 64088541
Intron Length:
1427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
ATTTTGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCATTTTGAAAT
Flanking Amino Acid:
FSVLAFPVSTFVSISFWTLY
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.8
0.8
0.8
77.4
41.2
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
55.7
0.26
1.5
70.38
40.5

Associated Gene:

Gene:
ADTRP
Ensembl Gene ID:
ENSAPLG00000012899
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035602
64079810 - 64104788
24979
ENSAPLT00000013428
64079810 - 64110912
31103