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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64088644_64096571_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64088644 - 64096571
Intron Length:
7928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCATATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATATCA
Flanking Amino Acid:
VIPLWLNHAMDRSKTCKKLI
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80.2
0.68
0.9
79.5
32.3
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
68.2
0.57
1.9
84.62
35.1

Associated Gene:

Gene:
ADTRP
Ensembl Gene ID:
ENSAPLG00000012899
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035602
64079810 - 64104788
24979