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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64088644_64099659_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64088644 - 64099659
Intron Length:
11016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
CAGTCTGTGACA
Flanking Amino Acid:
VIPLWLNHAMHTAILPVALL
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
86
0.81
0.6
84.8
22.9
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
48.5
-0.1
2
58.24
42

Associated Gene:

Gene:
ADTRP
Ensembl Gene ID:
ENSAPLG00000012899
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013428
64079810 - 64110912
31103