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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64099776_64104695_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64099776 - 64104695
Intron Length:
4920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ATTTCTCTCATT
Flanking Amino Acid:
LGCAAFLYISWVLWIHFVTG
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
86.3
28.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
72.4
0.5
0.9
65.3
40.8
Minor 5ss
39.6
-1.2
3.2
55.5
42.8
Minor BPS
53.5
0.19
2
78.67
38

Associated Gene:

Gene:
ADTRP
Ensembl Gene ID:
ENSAPLG00000012899
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035602
64079810 - 64104788
24979
ENSAPLT00000013428
64079810 - 64110912
31103