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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64171289_64178308_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64171289 - 64178308
Intron Length:
7020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAACCGGG
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATCTTTTGACT
Flanking Amino Acid:
AHGTVLRSLTEMWYWVFLWA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.3
47.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
41.8
-0.9
3.3
55.8
48.4
Minor BPS
64.3
0.53
1.2
75.14
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029535
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019201
64167150 - 64178405
11256