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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64193894_64196932_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64193894 - 64196932
Intron Length:
3039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGTT
5'SS Class:
major
3'SS Sequence:
ACTTTTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
ACTCTCTTCACT
Flanking Amino Acid:
LAKYLQQARKGPTGRLSVMG
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
69.9
40.6
Major BPS
77.5
0.68
1
79.6
33
Major PPT
74.8
0.56
0.9
75.2
33.9
Minor 5ss
34.2
-1.8
3.9
55.6
48.6
Minor BPS
59.6
0.38
1.8
75.16
41.7

Associated Gene:

Gene:
CCK
Ensembl Gene ID:
ENSAPLG00000001188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001177
64193757 - 64197188
3432