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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64373142_64373234_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64373142 - 64373234
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGCG
5'SS Class:
major
3'SS Sequence:
CCTCCCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTAAC
U12 Branch Point Sequence:
GGGACGTTAACC
Flanking Amino Acid:
MPGREVEMHPVLKAFIC
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
63.3
41.2
Major BPS
62.1
0.3
1.2
65
38.7
Major PPT
75.5
0.57
0.8
65.6
30.4
Minor 5ss
29.6
-2.3
3.4
39
46.3
Minor BPS
50.4
-0
2.1
60.84
43.9

Associated Gene:

Gene:
SLC25A38
Ensembl Gene ID:
ENSAPLG00000015901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016580
64373121 - 64377909
4789