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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64374336_64374798_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64374336 - 64374798
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTGCCTCTACA
Flanking Amino Acid:
PVTVVKTRYESGRFGYRSVY
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.1
76.2
35.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.5
0.66
0.8
72.6
32.3
Minor 5ss
35.9
-1.6
2.6
42.1
44.4
Minor BPS
52.4
0.07
2
67.53
44.7

Associated Gene:

Gene:
SLC25A38
Ensembl Gene ID:
ENSAPLG00000015901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016580
64373121 - 64377909
4789