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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64375781_64377171_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64375781 - 64377171
Intron Length:
1391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TGCTGTTTATCT
Flanking Amino Acid:
TSQAIAFIYKDFGLAGFFRG
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
81.6
0.71
0.8
76
32.4
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
51.7
0.13
2
71.96
45.3

Associated Gene:

Gene:
SLC25A38
Ensembl Gene ID:
ENSAPLG00000015901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016580
64373121 - 64377909
4789