Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64403500_64403716_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64403500 - 64403716

Intron Length:

217

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGAGAC

5'SS Class:

strong_major

3'SS Sequence:

CCTTCCATTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTCCAT

U12 Branch Point Sequence:

TGCCCTTCCATT

Flanking Amino Acid:

DLYFYRDPEEIEKEEQAAAE

Intron Amino Acid Position:

210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

69.5

35.6

Major BPS

0.37

1.3

76.1

Major PPT

79.8

0.67

0.8

73.5

29.8

Minor 5ss

29.3

-2.4

3.5

40.3

46.1

Minor BPS

45.6

-0.2

1.9

61.96

42.6

Associated Gene:

Gene:

RPSA

Ensembl Gene ID:

ENSAPLG00000015724

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023062

64399677 - 64403983

4307

ENSAPLT00000016418

64399677 - 64404397

4721