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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64403886_64404302_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64403886 - 64404302
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTGTTGCACT
Flanking Amino Acid:
PSVPIQQFPTEDWSAQPTTE
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1.2
78.8
38.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86.5
0.82
0.7
81
29.7
Minor 5ss
39.2
-1.2
2.8
49.7
46.6
Minor BPS
49.7
0.06
2.3
80.32
41.9

Associated Gene:

Gene:
RPSA
Ensembl Gene ID:
ENSAPLG00000015724
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016418
64399677 - 64404397
4721