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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64417373_64422310_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64417373 - 64422310
Intron Length:
4938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CCGATCCTAACA
Flanking Amino Acid:
GLIIPAILLMVLAIYYLNAV
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.8
34.4
Major BPS
72
0.55
1
71.8
31.4
Major PPT
88.3
0.86
0.7
84.9
29.9
Minor 5ss
48.1
-0.2
2.8
68.1
42.7
Minor BPS
48.8
-0
1.8
55.88
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016788
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028587
64417240 - 64424356
7117