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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64422437_64424177_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64422437 - 64424177
Intron Length:
1741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAACA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
CACACATTAACT
Flanking Amino Acid:
LPPSFDCGPFSGKKRMYEVI
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
67.4
37.7
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
91.8
0.94
0.6
84.7
30.2
Minor 5ss
32.8
-2
3
42
44.1
Minor BPS
59.1
0.36
1.7
71.25
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016788
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028587
64417240 - 64424356
7117