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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6451674_6516261_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6451674 - 6516261
Intron Length:
64588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTCTTTTTTACA
Flanking Amino Acid:
GIKFFSRSRKTSGLSSSPST
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
94.8
1.01
0.6
90.9
21.3
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
64.3
0.44
1.6
74.15
37.7

Associated Gene:

Gene:
PRKAG2
Ensembl Gene ID:
ENSAPLG00000004562
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004758
6386590 - 6594189
207600