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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64665415_64685404_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
64665415 - 64685404
Intron Length:
19990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
AGATTTATATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1
65.7
35.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
91.3
0.93
0.7
84.6
36
Minor 5ss
35.1
-1.7
2.9
41.1
40.5
Minor BPS
45.7
-0.2
1.7
60.31
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018812
64665410 - 64800065
134656