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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64685627_64717151_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64685627 - 64717151
Intron Length:
31525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGACC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TTTTGTGTAATT
Flanking Amino Acid:
AWICSVCQQTSCPMEEFTQS
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73
34.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
86.4
0.82
0.7
81.4
29.8
Minor 5ss
32.1
-2
3.3
43.2
44.2
Minor BPS
55
0.24
2.3
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026510
64590536 - 64717955
127420