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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64742094_64743771_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64742094 - 64743771
Intron Length:
1678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTTTTTTTAGCA
Flanking Amino Acid:
LESGVCPDVIDGGFLEGSFE
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
90.9
0.92
0.7
89.4
25.5
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
72.3
0.7
1.4
82.59
32.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021893
64590891 - 64800065
209175
ENSAPLT00000018812
64665410 - 64800065
134656
ENSAPLT00000016995
64590891 - 64799241
208351
ENSAPLT00000022224
64590891 - 64800065
209175