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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64743853_64744466_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64743853 - 64744466
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACTGC
5'SS Class:
major
3'SS Sequence:
TTTCCTCACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTTCCTCACCT
Flanking Amino Acid:
SDSTFYRQTEGHSMMDTLAV
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
57.6
42.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
73
0.52
0.8
66.7
34.5
Minor 5ss
42.5
-0.8
3.2
59.3
45.4
Minor BPS
71.8
0.76
1.8
92.41
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022224
64590891 - 64800065
209175
ENSAPLT00000021893
64590891 - 64800065
209175
ENSAPLT00000018812
64665410 - 64800065
134656
ENSAPLT00000016995
64590891 - 64799241
208351