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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64744565_64744882_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64744565 - 64744882
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACATTT
5'SS Class:
major
3'SS Sequence:
TGTCTTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTACAGATAACT
Flanking Amino Acid:
SKAETYSDSLDKQNEACYLQ
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
74.2
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79
0.65
0.9
74
35.7
Minor 5ss
49.6
-0
2.9
70.8
40.7
Minor BPS
43.3
-0.4
2.4
64.53
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021893
64590891 - 64800065
209175
ENSAPLT00000018812
64665410 - 64800065
134656
ENSAPLT00000016995
64590891 - 64799241
208351
ENSAPLT00000022224
64590891 - 64800065
209175