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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64746624_64759267_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64746624 - 64759267
Intron Length:
12644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTATCTTAAAA
Flanking Amino Acid:
GSRRGSYTLWRSQSAFSLAS
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
75.8
34.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.3
0.73
0.8
77
31.7
Minor 5ss
32.5
-2
3.1
35.2
41.4
Minor BPS
67.2
0.54
1.4
72.98
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021893
64590891 - 64800065
209175
ENSAPLT00000018812
64665410 - 64800065
134656
ENSAPLT00000016995
64590891 - 64799241
208351
ENSAPLT00000022224
64590891 - 64800065
209175