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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64759446_64762576_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64759446 - 64762576
Intron Length:
3131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TATTCTTTCATT
Flanking Amino Acid:
WKSVDRLNETNPSPVLQSTD
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
87
27.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
80.8
0.69
0.7
80.5
31.3
Minor 5ss
42.7
-0.8
3
60.1
38.5
Minor BPS
68.6
0.67
1.7
84.68
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021893
64590891 - 64800065
209175
ENSAPLT00000018812
64665410 - 64800065
134656
ENSAPLT00000016995
64590891 - 64799241
208351
ENSAPLT00000022224
64590891 - 64800065
209175