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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64763224_64771635_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64763224 - 64771635
Intron Length:
8412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTG
5'SS Class:
strong_major
3'SS Sequence:
AATTTCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TATACAGTAATT
Flanking Amino Acid:
TKANMKNLSQDFDDLSETDI
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
78.1
36.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
79.7
0.67
0.8
74.5
35.4
Minor 5ss
36.4
-1.5
3.3
49.3
46.9
Minor BPS
49.6
0.05
2.2
75.33
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022224
64590891 - 64800065
209175
ENSAPLT00000021893
64590891 - 64800065
209175
ENSAPLT00000018812
64665410 - 64800065
134656
ENSAPLT00000016995
64590891 - 64799241
208351