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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64790921_64795420_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64790921 - 64795420
Intron Length:
4500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
CTGGGCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
AAATCACCGACA
Flanking Amino Acid:
DEQLTTLEENVYLTAVTVYG
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
77.5
37.2
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
66.9
0.38
1
58.4
38.4
Minor 5ss
39.5
-1.2
3.1
54.3
42.8
Minor BPS
42.6
-0.5
2
53.28
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022224
64590891 - 64800065
209175
ENSAPLT00000021893
64590891 - 64800065
209175
ENSAPLT00000018812
64665410 - 64800065
134656
ENSAPLT00000016995
64590891 - 64799241
208351