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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64797553_64798381_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64797553 - 64798381
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCACTTG
5'SS Class:
major
3'SS Sequence:
GTATTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
AAAATCTCAATT
Flanking Amino Acid:
RRKLPAPPIKGEKKDGSPIT
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.1
59.3
42.3
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
85.7
0.8
0.8
80.8
36.6
Minor 5ss
40.3
-1.1
3.3
55.1
49.1
Minor BPS
52.6
0.16
1.5
65.58
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022224
64590891 - 64800065
209175
ENSAPLT00000021893
64590891 - 64800065
209175
ENSAPLT00000018812
64665410 - 64800065
134656