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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64798501_64799158_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64798501 - 64799158
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAATCG
5'SS Class:
major
3'SS Sequence:
CTCTCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TCTTTCTTTCCT
Flanking Amino Acid:
ERKSTAKDLMEPAIGSAVMY
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
61.1
38.3
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
78
0.63
0.8
76.4
32.2
Minor 5ss
37.8
-1.4
3.1
45.2
43.9
Minor BPS
45.4
-0.2
3.6
79.16
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022224
64590891 - 64800065
209175
ENSAPLT00000021893
64590891 - 64800065
209175
ENSAPLT00000018812
64665410 - 64800065
134656