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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64805948_64808986_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64805948 - 64808986
Intron Length:
3039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTTCTCTTCACA
Flanking Amino Acid:
LPEELPWCKQPSYHHSTMWH
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
88
0.86
0.6
83.6
24.7
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
67.6
0.55
1.7
80.35
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023148
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031524
64803951 - 64809132
5182