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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64817831_64819548_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64817831 - 64819548
Intron Length:
1718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGGGA
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTAAAAAAAACT
Flanking Amino Acid:
MSSIQNLQSFDPFADATKGD
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.4
41.8
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
29.1
-2.4
3.5
38.1
46.8
Minor BPS
41.8
-0.5
2.2
65.42
43.9

Associated Gene:

Gene:
EIF1B
Ensembl Gene ID:
ENSAPLG00000001143
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001201
64817800 - 64821141
3342