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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64819713_64820398_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64819713 - 64820398
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGTTC
5'SS Class:
major
3'SS Sequence:
TGTCTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AGTGTCTTAAAA
Flanking Amino Acid:
KKKLVKAFKKKFACNGTVIE
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
72.4
33.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
81.1
0.7
0.8
73.6
37
Minor 5ss
35.2
-1.7
3.5
49.2
47.3
Minor BPS
61.3
0.35
1.5
67.49
38.6

Associated Gene:

Gene:
EIF1B
Ensembl Gene ID:
ENSAPLG00000001143
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001201
64817800 - 64821141
3342