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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64820501_64821096_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64820501 - 64821096
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CTTTACTGAAAT
Flanking Amino Acid:
RKNICQFLLEIGIVKEEQLK
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
90.2
0.9
0.6
89.9
18.2
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
59.9
0.39
1.8
79.58
41.7

Associated Gene:

Gene:
EIF1B
Ensembl Gene ID:
ENSAPLG00000001143
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001201
64817800 - 64821141
3342