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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64865600_64876951_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64865600 - 64876951
Intron Length:
11352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAATT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
TYVNFPGWTKGQIWINGFNL
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
78.1
36.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
37.7
-1.4
3.4
57.7
46.5
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
GLB1
Ensembl Gene ID:
ENSAPLG00000001019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001219
64865339 - 64894220
28882
ENSAPLT00000046341
64864416 - 64894220
29805