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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64881043_64884122_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64881043 - 64884122
Intron Length:
3080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
GTAATTCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCGATGTAATT
Flanking Amino Acid:
YPLTFVQIKQVLQGILERDK
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
91.6
26.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
65.1
0.34
1
58.8
41.9
Minor 5ss
38.2
-1.3
3.4
56.9
47.4
Minor BPS
46.5
-0.1
2.2
67.74
44.1

Associated Gene:

Gene:
GLB1
Ensembl Gene ID:
ENSAPLG00000001019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001219
64865339 - 64894220
28882