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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64882282_64884122_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64882282 - 64884122
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GGTTCATTAATC
Flanking Amino Acid:
YPLTFVQIKQYFGFVLYRTK
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
91.6
26.4
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
87.8
0.85
0.6
88.4
21.1
Minor 5ss
38.2
-1.3
3.4
56.9
47.4
Minor BPS
67.7
0.54
1.6
73.57
36.8

Associated Gene:

Gene:
GLB1
Ensembl Gene ID:
ENSAPLG00000001019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046341
64864416 - 64894220
29805