Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64923366_64926556_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64923366 - 64926556

Intron Length:

3191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGCCC

5'SS Class:

strong_major

3'SS Sequence:

CACCCCTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCCCAC

U12 Branch Point Sequence:

CTTCTCCCACCC

Flanking Amino Acid:

YKYLQFAYFKANNLPKAIAA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

0.9

66.5

39.1

Major BPS

1.2

61.8

35.9

Major PPT

72.1

0.5

0.8

Minor 5ss

26.6

-2.7

3.1

33.5

41.9

Minor BPS

42.8

-0.5

56.28

42.1

Associated Gene:

Gene:

CRTAP

Ensembl Gene ID:

ENSAPLG00000001236

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047718

64922936 - 64943919

20984

ENSAPLT00000001322

64922936 - 64943919

20984